Merge branch 'sensitive-cloud-introduction' into 'master'

Add docs about sensitivecloud

See merge request !5

docs/accounts/docs/registration.md → docs/accounts/docs/creation.md

 
-CERIT-SC HW resources are part of MetaVO virtual organization of the Czech National Grid Organization MetaCentrum NGI. A registration in MetaVO is required. 
-
-Using of MetaVO is free of charge, we only require agreement with usage rules, acknowlegement in user's publications, and annual report of achieved results.
-
 ## Usage rules
-The membership in MetaVO is allowed without any restrictions only to persons from academic environment of the Czech republic, for research purposes only.
+The membership in e-INFRA VO is allowed without any restrictions only to persons from academic environment of the Czech republic, for research purposes only.
 By submitting an application form you agree with MetaVO usage rules and you certify that you have read and understood terms and conditions of use of MetaVO hardware and software equipment and applications. 
 The user of MetaCentrum is obliged to use the acknowledgement formula in all publications created with the support of CERIT-SC equipment:
 

docs/accounts/mkdocs.yml

-site_name: Accounts
+site_name: "accounts"
 
 nav:
   - Overview: index.md
-  - Membership Registration: registration.md
-  - Membership Renewal: renewal.md
+  - Membership Registration: creation.md
+  - Membership Properties: properties.md
+  - Account Management: access.md

docs/accounts/registration.md

-
-CERIT-SC HW resources are part of MetaVO virtual organization of the Czech National Grid Organization MetaCentrum NGI. A registration in MetaVO is required. 
-
-Using of MetaVO is free of charge, we only require agreement with usage rules, acknowlegement in user's publications, and annual report of achieved results.
-
-## Usage rules
-The membership in MetaVO is allowed without any restrictions only to persons from academic environment of the Czech republic, for research purposes only.
-By submitting an application form you agree with MetaVO usage rules and you certify that you have read and understood terms and conditions of use of MetaVO hardware and software equipment and applications. 
-The user of MetaCentrum is obliged to use the acknowledgement formula in all publications created with the support of CERIT-SC equipment:
-
-### ACKNOWLEDGEMENT FORMULA:
-> "Access to the CERIT-SC computing and storage facilities provided by the CERIT-SC Center, under the programme "Projects of Large Research, Development, and Innovations Infrastructures" (CERIT Scientific Cloud LM2015085), is greatly appreciated."
-
-REGISTRATION FORM
-Ask for account in MetaVO
-
-Password
-User access to MetaVO resources is enabled by using your user login name and corresponding password. The password will serve you as the only central password enabling unified access (using Kerberos system technology) to all MetaVO computational capacities.
-
-Please, take the password security properly and seriously (do not choose trivial password, do not write it down anywhere, do not tell it to anybody) and do not forget it firstly! If you accidentally forgot the password, you can set it at My Acccount - Change password.
-

docs/accounts/renewal.md

-## Membership Renewal
-Once a year, usualy at the end of calendar year, the user asks for renewal of the memebrship in order to continue using CERIT-SC Services. It is accompanied by annual report with achieved results and filling publications with acknowledgement to CERIT-SC to Perun system.
-
-## Annual report
-
-Users groups and users with large CPU time used are obliged to send their annual report to: annual-report@metacentrum.cz
-
-### Format
-
-- the report must be in English
-- preferred format: LaTeX or MS Word
-
-### Content
-
-The report shall describe the scientific work related to using MetaVO resources and services in last year(s).
-
-- article name
-- authors, e-mail of the author of the article, organizations and address
-- abstract
-- the text ;)
-- financing sources (grants, ...), involvement in international research projects (ESFRI, VI,...)
-- used programs and applications
-- list of publications with acknowledgement to MetaCentrum/CERIT-SC
\ No newline at end of file

docs/compute/concepts/mkdocs.yml

-site_name: Cloud Concepts
+site_name: "compute/concepts"
 
 nav:
   - Overview: index.md

docs/compute/grid/docs/index.md

+---
+hide:
+  - toc
+---
+
+# e-INFRA CZ Grid computing
+
+Metacentrum Grid documentation is currently located at [https://wiki.metacentrum.cz/wiki/Hlavn%C3%AD_strana](https://wiki.metacentrum.cz/wiki/Hlavn%C3%AD_strana)
\ No newline at end of file

docs/compute/grid/mkdocs.yml

+site_name: "compute/grid"
+
+nav:
+  - Overview: index.md

docs/compute/index.md

@@ -16,10 +16,10 @@ e-INFRA CZ provides a wide range of computational services for the scientific co
 
     It is possible to choose level of service from virtualization to managed container engine.
 
-    [:octicons-arrow-right-24: Virtualization (OpenStack Cloud)](#)   
-    [:octicons-arrow-right-24: Container Engine (Kubernetes)](#)   
-    [:octicons-arrow-right-24: Sensitive Proccessing](#)   
-    [:octicons-arrow-right-24: More](#)
+    [:octicons-arrow-right-24: Virtualization (OpenStack Cloud)](./openstack/)   
+    [:octicons-arrow-right-24: Container Engine (Kubernetes)](./kubernetes/)   
+    [:octicons-arrow-right-24: Sensitive Proccessing](./sensitive/)   
+    [:octicons-arrow-right-24: More](./concepts/)
 
 -   :fontawesome-solid-microchip:{ .md .middle } __Batch computing__
 
@@ -27,9 +27,9 @@ e-INFRA CZ provides a wide range of computational services for the scientific co
 
     Traditional distributed computing with software and queues.
 
-    [:octicons-arrow-right-24: How to start](#)   
-    [:octicons-arrow-right-24: Running first job](#)   
-    [:octicons-arrow-right-24: More](#)   
+    [:octicons-arrow-right-24: How to start](./grid/)   
+    [:octicons-arrow-right-24: Running first job](./grid/)   
+    [:octicons-arrow-right-24: More](./grid/)   
 
 -   :fontawesome-solid-floppy-disk:{ .md .middle } __Supercomputing__
 
@@ -37,21 +37,20 @@ e-INFRA CZ provides a wide range of computational services for the scientific co
 
     Supercomputing centre services.
 
-    [:octicons-arrow-right-24: Karolina](#)   
-    [:octicons-arrow-right-24: LUMI](#)   
-    [:octicons-arrow-right-24: More](#)   
+    [:octicons-arrow-right-24: Overview](./supercomputing/)   
+    [:octicons-arrow-right-24: Get Project](./supercomputing/general/applying-for-resources/)   
+    [:octicons-arrow-right-24: LUMI](https://docs.lumi-supercomputer.eu/)   
 
 
 </div>
 
 ## How to choose between computing services?
 
-- Read computing service overview
-- Check comparision between computing services
-- ...
+- [Read computing service overview](./concepts/)
+- Check comparision between computing services _(TODO)_
 
 ## See how different scientific use-cases are implemented.
 
-- Cybersecurity platform
-- Sensitive data obtaining to processing on cloud infrastructure
-- Computing large scale data at grids
\ No newline at end of file
+- [Cybersecurity platform](./concepts/use-cases/muni-kypo)
+- Sensitive data obtaining to processing on cloud infrastructure _(TODO)_
+- Computing large scale data at grids _(TODO)_
\ No newline at end of file

docs/compute/kubernetes/mkdocs.yml

-site_name: "Kubernetes"
+site_name: "compute/containers"
 
 nav:
   - 'Overview': index.md

docs/compute/openstack/mkdocs.yml

-site_name: "OpenStack"
+site_name: "compute/openstack"
 
 nav:
   - index.md

docs/compute/sensitive/docs/getting-started/connecting-to-sensitive-cloud.md

+# Connecting to the Sensitive Cloud
+
+The primary management portal to manage sensitive computing resources is Rancher located at [https://rancher.cloud.trusted.e-infra.cz/](https://rancher.cloud.trusted.e-infra.cz). Before you will be able to log in, you will need go through few additional steps, that will ensure secure communication with SensitiveCloud environment.
+
+The use of the environment's resources is available only to authorized persons, and only through a dedicated virtual private network (VPN). The authorization and authentication infrastructure is implemented by the Perun service with enforced more advanced security features (two-factor authentication, etc.). 
+
+These are prerequisites have to communicate with SensitiveCloud:
+
+1.	You have an activated project [Tutorial how to create project in SensitiveCloud](./new-project.md)
+2.	Defined access entity in Masaryk University Identity and Access Management (Perun) [Tutorial to create authorized group of users](https://it.muni.cz/sluzby/sprava-skupin-a-pristupu/navody/jak-vytvorit-skupiny)
+3.	Activated and obtained VPN. [Tutorial for using VPN](/managed-services/network/secure-vpn)
+4.	Activated and Tested Multifactor authentication on MUNI SSO. [Tutorial to set up the MFA](https://it.muni.cz/en/services/jednotne-prihlaseni-na-muni/navody/how-to-set-up-multi-factor-authentication)
\ No newline at end of file

docs/compute/sensitive/docs/getting-started/new-project.md

+# New project in the Sensitive Cloud
+
+The current method how to obtain project in Sensitive Cloud.
+
+# Requesting project 
+
+Resources of SensitiveCloud can be obtained by contacting support@e-infra.cz. Please specify basic description and requested resources and scope of your project.
+We will arrange a meeting, where details of your use-case will be discussed.
\ No newline at end of file

docs/compute/sensitive/docs/index.md

-Sensitive computing is
-TBD
\ No newline at end of file
+SensitiveCloud is a computing and storage environment for working with sensitive data. This environment is primarily designed for research in academia, especially in the life sciences and medicine; however, its use is also suitable for sensitive data processing in other areas. For the definition of the processes and the technical design of the environment, the requirements arising from the ISO 27000 family of standards are used; then C5, ISO 15189 and ECRIN.
+
+## About environemnt
+The environment is built on modern container technology using Kubernetes platform (K8s). It provides a high level of scalability, dynamic environment and other features such as GPU acceleration of computations. The solution thus does not require the laborious deployment and management of entire virtual machines with their own operating systems, but rather containerises the applications themselves. Users can choose whether to use one of the predefined containers with frequently used applications or to containerise their applications themselves.
+
+## Provider
+The SensitiveCloud environment is provided by CERIT-SC, which is an organisational unit of the Institute of Computing at Masaryk University and one of the three members of the large research infrastructure e-INFRA CZ.
+
+## What's next?
+- [How to create new project in SensitiveCloud](./getting-started/new-project.md)
+- [Connecting to the SensitiveCloud management](./getting-started/new-project.md)
+- [Working with the SensitiveCloud](https://docs.cerit.io/)
\ No newline at end of file

docs/compute/sensitive/mkdocs.yml

-site_name: "Sensitive"
+site_name: "compute/sensitive-cloud"
 
 nav:
   - Overview: index.md
   - Getting started:
-    - Creating project:
-      -  Sign to perun
-      -  Access projman
-      -  Send request
+    - getting-started/new-project.md
+    - getting-started/connecting-to-sensitive-cloud.md
+  - Technical documentation: https://docs.cerit.io

docs/compute/supercomputing/mkdocs.yml

-site_name: Supercomputing
+site_name: "compute/supercomputing"
 
 nav:
   - General:

docs/index.md

@@ -23,11 +23,11 @@ The home for documentation of all e-INFRA CZ services that are provided to scien
 
     Start by setting up your **e-INFRA CZ** identity, which will give you an access to all services.
 
-    [:octicons-arrow-right-24: Account creation](#)   
-    [:octicons-arrow-right-24: Accessing your account](#)   
-    [:octicons-arrow-right-24: Account properties](#)   
-    [:octicons-arrow-right-24: Account management](#)   
-    [:octicons-arrow-right-24: More](#)
+    [:octicons-arrow-right-24: Account creation](/accounts/creation)   
+    [:octicons-arrow-right-24: Accessing your account](/accounts/access)   
+    [:octicons-arrow-right-24: Account properties and lifecycle](/accounts/properties)   
+    [:octicons-arrow-right-24: Account management](/accounts/properties)   
+    [:octicons-arrow-right-24: Multi-Factor Authentication](/accounts/properties)   
 
 -   :fontawesome-solid-microchip:{ .lg .middle } __Computing__
 
@@ -35,11 +35,12 @@ The home for documentation of all e-INFRA CZ services that are provided to scien
 
     Focus on what's important, your research can be accelerated with our **big** servers.
 
-    [:octicons-arrow-right-24: Overview](#)   
-    [:octicons-arrow-right-24: Batch computing (Metacentrum Grid)](#)   
-    [:octicons-arrow-right-24: Cloud (Vritualization, Containers, ...)](#)   
-    [:octicons-arrow-right-24: Supercomputing](#)   
-    [:octicons-arrow-right-24: Sensitive data processing](#)   
+    [:octicons-arrow-right-24: Overview](/compute/)   
+    [:octicons-arrow-right-24: Batch computing (Metacentrum Grid)](/compute/grid)   
+    [:octicons-arrow-right-24: Compute Cloud (Vritualization)](/compute/openstack/)   
+    [:octicons-arrow-right-24: Containers Cloud](/compute/containers/)   
+    [:octicons-arrow-right-24: Supercomputing](/compute/supercomputing/)   
+    [:octicons-arrow-right-24: Sensitive data processing](/compute/sensitive-cloud)   
 
 -   :fontawesome-solid-floppy-disk:{ .lg .middle } __Storage__
 
@@ -47,12 +48,12 @@ The home for documentation of all e-INFRA CZ services that are provided to scien
 
     Need to store **terabytes** of data? No problem. Read what capabilities you have.
 
-    [:octicons-arrow-right-24: Overview](#)   
-    [:octicons-arrow-right-24: Storing data](#)   
-    [:octicons-arrow-right-24: Sharing data](#)   
-    [:octicons-arrow-right-24: Data archivation/backups](#)   
-    [:octicons-arrow-right-24: Sensitive data](#)   
-    [:octicons-arrow-right-24: More (data repositories, ...)](#)   
+    [:octicons-arrow-right-24: Overview](/storage/)   
+    [:octicons-arrow-right-24: Storing data](/storage/)   
+    [:octicons-arrow-right-24: Sharing data](/storage/)   
+    [:octicons-arrow-right-24: Data archivation/backups](/storage/)   
+    [:octicons-arrow-right-24: Sensitive data](/storage/)   
+    [:octicons-arrow-right-24: More (data repositories, ...)](/storage/)   
 
 
 </div>

docs/storage/mkdocs.yml

-site_name: "Storage"
+site_name: "storage"
 
 nav:
   - Overview: index.md

e-infra_theme/partials/toc.html

@@ -7,11 +7,11 @@
   {% if page.url == '' %}
     {% set it4i_link = config.repo_url + '/edit/master/docs.it4i/index.md' %}
     {% set it4i_page = '/index.md' %}
-    {% set it4i_url = 'https://docs.it4i.cz' %}
+    {% set it4i_url = 'https://docs.e-infra.cz' %}
   {% else %}
-    {% set it4i_link = config.repo_url + '/edit/master/docs.it4i/' + page.url.rstrip('/') + '.md' %}
+    {% set it4i_link = config.repo_url + '/edit/master/docs/' + page.url.rstrip('/') + '.md' %}
     {% set it4i_page = page.abs_url.rstrip('index.html').rstrip('/') + '.md' %}
-    {% set it4i_url = 'https://docs.it4i.cz' +  page.abs_url %}
+    {% set it4i_url = 'https://docs.e-infra.cz' +  page.abs_url %}
   {% endif %}
     <label class="md-nav__title" for="__toc">
       <span class="md-nav__icon md-icon">
@@ -24,26 +24,21 @@
         {% include "partials/toc-item.html" %}
       {% endfor %}
     </ul>
+    <br />
     <label class="md-nav__title">Actions</label>
     <ul class="md-nav__list" data-md-scrollfix>
     <li class="md-nav__item">
-      <a href="{{ it4i_link }}" title="Edit This Page" class="md-nav__it4i_link" target="_blank">
-        <span class="md-nav__icon md-icon">
-        </span>
+      <a href="{{ it4i_link }}" title="Edit This Page" class="md-nav__link" target="_blank">
 	Edit This Page
       </a>
     </li>
     <li class="md-nav__item">
-      <a href="https://code.it4i.cz/sccs/docs.it4i.cz/issues/new?issue%5Bdescription%5D=Requested change in page [{{ it4i_page }}]({{ it4i_url }}) /cc @siw019 @kru0052" title="Request Change" class="md-nav__it4i_link" target="_blank">
-        <span class="md-nav__icon md-icon">
-        </span>
+      <a href="{{ config.repo_url }}/issues/new?issue%5Bdescription%5D=Requested change in page [{{ it4i_page }}]({{ it4i_url }}) /cc @siw019 @kru0052" title="Request Change" class="md-nav__link" target="_blank">
 	Request Change
       </a>
     </li>
     <li class="md-nav__item">
-      <a href="https://support.it4i.cz/rt" title="Get Support" class="md-nav__it4i_link" target="_blank">
-        <span class="md-nav__icon md-icon">
-        </span>
+      <a href="https://support.it4i.cz/rt" title="Get Support" class="md-nav__link" target="_blank">
 	Get Support
       </a>
     </li>