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Commit 51c94094 authored by Jan Siwiec's avatar Jan Siwiec
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Update nextflow.md

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......@@ -112,7 +112,7 @@ kubectl logs POD -n NAMESPACE
```
where `POD` is the name of the *worker* (e.g., `nf-81dae79db8e5e2c7a7c3ad5f6c7d59c6`) and `NAMESPACE` is used namespace.
## nf-core/sarek pipeline
## nf-core/sarek Pipeline
[nf-core/sarek](https://nf-co.re/sarek) is analysis pipeline to detect germline
or somatic variants (pre-processing, variant calling and annotation) from WGS /
......@@ -174,8 +174,7 @@ the PVC.
* Manual resuming of Sarek is possible using different `--input` spec. See [here](https://nf-co.re/sarek/2.7.1/usage#troubleshooting).
## vib-singlecell-nf/vsn-pipelines pipeline
## vib-singlecell-nf/vsn-pipelines Pipeline
[vsn-pipelines](https://vsn-pipelines.readthedocs.io/en/latest/) contain multiple workflows for analyzing single cell transcriptomics data, and depends on a number of tools.
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