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Commit e65b0e8c authored by Josef Handl's avatar Josef Handl
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set vars in scipion.conf file

parent 39549ccc
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......@@ -36,8 +36,15 @@ USER scipionuser
# Install scipion
RUN echo "" | /opt/scipion/scipion config
RUN sed -i 's/MPI_LIBDIR\s*=.*/MPI_LIBDIR = \/usr\/lib\/x86_64-linux-gnu\/openmpi\/lib/' /opt/scipion/config/scipion.conf && \
sed -i 's/MPI_INCLUDE\s*=.*/MPI_INCLUDE = \/usr\/lib\/x86_64-linux-gnu\/openmpi\/include/' /opt/scipion/config/scipion.conf
RUN sed -i 's/CUDA\s*=.*/CUDA = True/' /opt/scipion/config/scipion.conf && \
sed -i 's/CUDA_LIB\s*=.*/CUDA_LIB = \/usr\/local\/cuda\/lib64/' /opt/scipion/config/scipion.conf && \
sed -i 's/CUDA_BIN\s*=.*/CUDA_BIN = \/usr\/local\/cuda\/bin/' /opt/scipion/config/scipion.conf && \
echo "RELION_CUDA_LIB = /usr/local/cuda/lib64" >> /opt/scipion/config/scipion.conf && \
echo "RELION_CUDA_BIN = /usr/local/cuda/bin" >> /opt/scipion/config/scipion.conf && \
echo "MOTIONCOR2_BIN = MotionCor2_1.3.0-Cuda101" >> /opt/scipion/config/scipion.conf && \
echo "GCTF = Gctf_v1.18_sm30-75_cu10.1" >> /opt/scipion/config/scipion.conf && \
echo "GAUTOMATCH = Gautomatch_v0.56_sm30-75_cu10.1" >> /opt/scipion/config/scipion.conf && \
sed -i 's/NVCC_INCLUDE\s*=.*/NVCC_INCLUDE = \/usr\/local\/cuda\/include/' /opt/scipion/config/scipion.conf
COPY plugin-list-pl.txt /
COPY plugin-list-bin.txt /
......
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