original integrated demo script, keep for reference only

demo.py

+#!/usr/bin/env python3
+
+import requests
+import json
+
+import sys
+import time
+
+hub = 'https://datahub-dev.edirex.ics.muni.cz/api/v1'
+cbod = 'http://cbiood.edirex.ics.muni.cz'
+cbod_api = cbod + '/api/v1'
+
+ids = []
+first = True
+
+with open(sys.argv[1]) as fin:
+	for line in fin:
+		f = line.split(',')
+		if not first: ids.append(f[2])
+		first = False
+		
+print('ID list: ',ids)
+
+tmplist_req = json.dumps({'pdxmodel_list' : ids})
+
+print('/tmplists request', tmplist_req)
+
+r = requests.post(hub + '/tmplists',data = tmplist_req,headers={'Content-Type':'application/json'})
+
+if r.status_code == 201:
+	listid = r.json()['tmplistid']
+	print('List id: ',listid)
+else:
+	print('Status: ', r.status_code)
+	print(r.text)
+	sys.exit(1)
+
+cbod_req = json.dumps({'user': { 'userId' : 'dummy'}, 'sampleIDs': str(listid) })
+print('/cbioondemand request:', cbod_req)
+
+r = requests.post(cbod_api + '/cbioondemand', data = cbod_req, headers={'Content-Type':'application/json'}, verify=False)
+
+print(r)
+
+if r.status_code == 200:
+	cbod_id = r.json()['id']
+else:
+	print('Status: ',r.status_code)
+	print(r.text)
+	sys.exit(1)
+
+# {"id":"cod8wq77","user":{"userId":null},"secondsToExpire":600000,"url":"7f25f5a3-58c2-432b-9662-df1defc031f3","status":"creating"}
+
+r_json = r.json()
+print('Response:', r_json)
+
+
+stat_req = cbod_api + '/cbioondemand?id=%s&user.userId=%s' % (r_json['id'], r_json['user']['userId'])
+print(stat_req)
+
+while True:
+	stat = requests.get(stat_req,verify=False)
+	if stat.status_code == 200:
+		if stat.json()['status'] == 'active':
+			break
+		else:
+			print('Status: ',stat.json()['status'])
+	time.sleep(5)
+
+print('cBioPortal ready at %s/%s' % (cbod,r_json['url']))
+