Add hg38 init scripts

data/init_hg38.sh

+# Download the seed database
+
+wget -O cgds.sql "https://github.com/cBioPortal/datahub/raw/master/seedDB_hg38/cgds.sql" && wget -O seed.sql.gz "https://github.com/cBioPortal/datahub/raw/master/seedDB_hg38/seed-cbioportal_hg19_hg38_v2.11.0.sql.gz"

docker-compose.yml

@@ -3,7 +3,7 @@ version: '3'
 services:
   cbioportal:
     restart: unless-stopped
-    image: inodb/cbioportal:docker-compose-layer
+    image: cbioportal/cbioportal:3.4.6
     container_name: cbioportal_container
     environment:
       SHOW_DEBUG_INFO: "true"
@@ -29,7 +29,7 @@ services:
       MYSQL_ROOT_PASSWORD: somepassword
     volumes:
      - ./data/cgds.sql:/docker-entrypoint-initdb.d/cgds.sql:ro
-     - ./data/seed-cbioportal_hg19_v2.7.3.sql.gz:/docker-entrypoint-initdb.d/seed.sql.gz:ro
+     - ./data/seed.sql.gz:/docker-entrypoint-initdb.d/seed.sql.gz:ro
      - cbioportal_mysql_data:/var/lib/mysql
     networks:
      - cbio-net

init_hg38.sh

+#!/usr/bin/env bash
+for d in config study; do
+    cd $d; ./init.sh
+    cd ..
+done
+for d in data; do
+    cd $d; ./init_hg38.sh
+    cd ..
+done